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Repository revision

Revision: 2:2e773e00ceb0

Repository 'schicexplorer_schicadjustmatrix'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicadjustmatrix

scHicAdjustMatrix tool metadata

Miscellaneous

Name: scHicAdjustMatrix

Description: clusters single-cell Hi-C interaction matrices on the raw data

Id: schicexplorer_schicadjustmatrix

Guid: toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicadjustmatrix/schicexplorer_schicadjustmatrix/4.1

Version: 4.1

Version command string: scHicAdjustMatrix --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicadjustmatrix/schicexplorer_schicadjustmatrix/4.1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicadjustmatrix/schicexplorer_schicadjustmatrix/4.0

toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schicadjustmatrix/schicexplorer_schicadjustmatrix/1.0

schicexplorer_schicadjustmatrix

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

schicexplorer

4

package

Functional tests

name

inputs

outputs

required files

Test-1

matrix_scooler: test_matrix.scool
action_selector: keep
chromosomes: chr1 chr2 chr3 chr4 chr5 chr6 chr7 chr8 chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17 chr18 chr19 chrX

name: value

test_matrix.scool
value