Repository revision
3:2ec9253a647e

Repository 'ramclustr'
hg clone https://toolshed.g2.bx.psu.edu/repos/recetox/ramclustr

RAMClustR tool metadata
Miscellaneous
RAMClustR
A feature clustering algorithm for non-targeted mass spectrometric metabolomics data.
ramclustr
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy2
1.2.4+galaxy2
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.3.0+galaxy0
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy2 (this tool)
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy1
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.4+galaxy0
toolshed.g2.bx.psu.edu/repos/recetox/ramclustr/ramclustr/1.2.2+galaxy2
ramclustr
Requirements (dependencies defined in the <requirements> tag set)
name version type
r-ramclustr 1.2.4 package
bioconductor-xcms 3.14.0 package
Functional tests
name inputs outputs required files
Test-1 filetype|xcms|input_xcms: test1_xcmsObj_1.rdata.xcms.fillpeaks
filetype|required|maxt: 259.8
filetype|type_choice: xcms
extras|ExpDes: lc-ramclustr-define-experiment.csv
name: value
name: value
test1_xcmsObj_1.rdata.xcms.fillpeaks
lc-ramclustr-define-experiment.csv
value
Test-2 filetype|xcms|input_xcms: test2_xcmsObj_2.rdata.xcms.fillpeaks
filetype|required|maxt: 78.4
filetype|type_choice: xcms
name: value
name: value
test2_xcmsObj_2.rdata.xcms.fillpeaks
value
Test-3 filetype|ms_csv|ms: test3_csv_test-input_1_2.csv
filetype|required|st: 5.0
filetype|required|maxt: 1
filetype|type_choice: csv
performance|blocksize: 1000
performance|mult: 1
name: value
name: value
test3_csv_test-input_1_2.csv
value
Test-4 filetype|ms_csv|ms: test3_csv_test-input_1_2.csv
filetype|type_choice: csv
name: value
test3_csv_test-input_1_2.csv
value