| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.7.0+galaxy3 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.7.0+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.7.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.7.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/bionano_scaffold/bionano_scaffold/3.6.1+galaxy0 |
| bionano_scaffold |
| Requirements (dependencies defined in the <requirements> tag set) |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
ngs_fasta: assembly.fasta.gz bionano_cmap: colormap_assembly.cmap configuration_options|configuration_file: configuration.xml configuration_options|configuration: file conflict_filter_genome: 3 conflict_filter_sequence: 3 zip_file: True trim_cut_sites: False |
name: value name: value name: value name: value name: value |
assembly.fasta.gz colormap_assembly.cmap configuration.xml value |
| Test-2 |
ngs_fasta: assembly.fasta.gz bionano_cmap: colormap_assembly.cmap configuration_options|configuration_file: configuration.xml configuration_options|configuration: file conflict_filter_genome: 2 conflict_filter_sequence: 2 trim_cut_sites: False |
name: value name: value name: value name: value |
assembly.fasta.gz colormap_assembly.cmap configuration.xml value |
| Test-3 |
ngs_fasta: assembly.fasta.gz bionano_cmap: colormap_assembly.cmap configuration_options|configuration_file: configuration.xml configuration_options|configuration: file conflict_filter_genome: 2 conflict_filter_sequence: 3 zip_file: True trim_cut_sites: False |
name: value name: value name: value name: value name: value |
assembly.fasta.gz colormap_assembly.cmap configuration.xml value |
| Test-4 |
ngs_fasta: assembly.fasta.gz bionano_cmap: colormap_assembly.cmap configuration_options|enzyme: BspQI configuration_options|configuration: vgp conflict_filter_genome: 2 conflict_filter_sequence: 3 zip_file: True trim_cut_sites: False |
name: value name: value name: value name: value name: value |
assembly.fasta.gz colormap_assembly.cmap value |
| Test-5 |
ngs_fasta: assembly.fasta.gz bionano_cmap: colormap_assembly.cmap configuration_options|configuration_file: configuration.xml configuration_options|configuration: file conflict_filter_genome: 3 conflict_filter_sequence: 3 trim_cut_sites: True |
name: value name: value name: value name: value |
assembly.fasta.gz colormap_assembly.cmap configuration.xml value |
| Test-6 |
ngs_fasta: assembly.fasta.gz bionano_cmap: colormap_assembly.cmap configuration_options|configuration_file: configuration.xml configuration_options|configuration: file conflict_filter_genome: 3 conflict_filter_sequence: 3 all_files: True trim_cut_sites: True |
name: value name: value name: value name: value name: value name: value name: value |
assembly.fasta.gz colormap_assembly.cmap configuration.xml value |