Repository revision
0:415cb5d91168

Repository 'picrust2_metagenome_pipeline'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/picrust2_metagenome_pipeline

PICRUSt2 Metagenome prediction tool metadata
Miscellaneous
to generate per-sample metagenome functional profiles based on the predicted functions for each study sequence
picrust2_metagenome_pipeline
toolshed.g2.bx.psu.edu/repos/iuc/picrust2_metagenome_pipeline/picrust2_metagenome_pipeline/2.5.1+galaxy0
2.5.1+galaxy0
metagenome_pipeline.py -v
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/picrust2_metagenome_pipeline/picrust2_metagenome_pipeline/2.5.1+galaxy0 (this tool)
picrust2_metagenome_pipeline
Requirements (dependencies defined in the <requirements> tag set)
name version type
picrust2 2.5.1 package
Functional tests
name inputs outputs required files
Test-1 input: table.mothur.shared
input_options|selector: OTU
function: EC_predicted.tsv.gz
marker: 16S_predicted_and_nsti.tsv.gz
max_nsti: 2.0
stratified_output|selector:
skip_norm: False
name: value
name: value
name: value
table.mothur.shared
EC_predicted.tsv.gz
16S_predicted_and_nsti.tsv.gz
value
Test-2 input: table.biom
input_options|min_reads: 1
input_options|min_samples: 1
input_options|selector: ASV
function: EC_predicted.tsv.gz
marker: 16S_predicted_and_nsti.tsv.gz
max_nsti: 2.0
stratified_output|selector:
skip_norm: False
name: value
name: value
name: value
table.biom
EC_predicted.tsv.gz
16S_predicted_and_nsti.tsv.gz
value
Test-3 input: table.biom
input_options|min_reads: 1
input_options|min_samples: 1
input_options|selector: ASV
function: EC_predicted.tsv.gz
marker: 16S_predicted_and_nsti.tsv.gz
max_nsti: 2.0
stratified_output|wide_table: True
stratified_output|selector: --strat_out
skip_norm: False
name: value
name: value
name: value
name: value
table.biom
EC_predicted.tsv.gz
16S_predicted_and_nsti.tsv.gz
value
Test-4 input: table.biom
input_options|min_reads: 1
input_options|min_samples: 1
input_options|selector: ASV
function: EC_predicted.tsv.gz
marker: 16S_predicted_and_nsti.tsv.gz
max_nsti: 2.0
stratified_output|wide_table: False
stratified_output|selector: --strat_out
skip_norm: False
name: value
name: value
name: value
name: value
table.biom
EC_predicted.tsv.gz
16S_predicted_and_nsti.tsv.gz
value