| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/2.0.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.9.1 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.6.1galaxy3 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.6.1galaxy2 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.6.1galaxy1 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.4.1 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.4 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.3.2 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.3.1 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.3 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.2.1 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.2 |
| toolshed.g2.bx.psu.edu/repos/lparsons/htseq_count/htseq_count/0.1 |
| htseq_count |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| htseq | 2.0.5 | package |
| samtools | 1.19.2 | package |
| gawk | 5.3.0 | package |
| coreutils | 9.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
samfile: htseq-test.sam gfffile: htseq-test.gtf |
name: value name: value |
htseq-test.sam htseq-test.gtf value |
| Test-2 |
samfile: htseq-test.sam gfffile: htseq-test.gff |
name: value name: value |
htseq-test.sam htseq-test.gff value |
| Test-3 |
samfile: htseq-test_nosq.sam gfffile: htseq-test.gff reference_source|ref_file: htseq-test_reference.fasta reference_source|reference_source_selector: history |
name: value name: value |
htseq-test_nosq.sam htseq-test.gff htseq-test_reference.fasta value |
| Test-4 |
samfile: htseq-test.bam gfffile: htseq-test.gff |
name: value name: value |
htseq-test.bam htseq-test.gff value |
| Test-5 |
samfile: htseq-test-paired.bam gfffile: htseq-test.gff |
name: value name: value |
htseq-test-paired.bam htseq-test.gff value |
| Test-6 |
samfile: htseq-test-paired.bam gfffile: htseq-test.gff |
name: value name: value |
htseq-test-paired.bam htseq-test.gff value |
| Test-7 |
samfile: htseq-test.sam gfffile: htseq-test.gff advanced_options|samout: True advanced_options|advanced_options_selector: advanced |
name: value name: value name: value |
htseq-test.sam htseq-test.gff value |
| Test-8 |
samfile: htseq-test.sam gfffile: htseq-test.gff advanced_options|nonunique: all advanced_options|secondary_alignments: True advanced_options|supplementary_alignments: True advanced_options|advanced_options_selector: advanced |
name: value name: value |
htseq-test.sam htseq-test.gff value |