| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.48.0+galaxy1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.48.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.46.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.46.0.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.4 |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.3 |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/kallisto_quant/kallisto_quant/0.43.1.0 |
| kallisto_quant |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| kallisto | 0.48.0 | package |
| samtools | 1.14 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
reference_transcriptome|reference: mm10_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|forward: mm10_chrM-1.f.fq single_paired|reverse: mm10_chrM-1.r.fq single_paired|single_paired_selector: paired_single |
name: value |
mm10_chrM.fa mm10_chrM-1.f.fq mm10_chrM-1.r.fq value |
| Test-2 |
reference_transcriptome|reference: mm10_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|forward: mm10_chrM-1.f.fq single_paired|reverse: mm10_chrM-1.r.fq single_paired|lib_type: --fr-stranded single_paired|single_paired_selector: paired_single |
name: value |
mm10_chrM.fa mm10_chrM-1.f.fq mm10_chrM-1.r.fq value |
| Test-3 |
reference_transcriptome|reference: mm10_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|reads: paired collection single_paired|single_paired_selector: paired_collection |
name: value |
mm10_chrM.fa mm10_chrM-1.f.fq mm10_chrM-1.r.fq value |
| Test-4 |
reference_transcriptome|reference: mm10_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|reads: mm10_chrM-1.f.fq single_paired|single_paired_selector: single |
name: value |
mm10_chrM.fa mm10_chrM-1.f.fq value |
| Test-5 |
reference_transcriptome|reference: felCat8_chrM.fa reference_transcriptome|reference_transcriptome_source: history single_paired|forward: felCat8_chrM_F.fq single_paired|reverse: felCat8_chrM_R.fq single_paired|single_paired_selector: paired_single pseudobam: True |
name: value name: value |
felCat8_chrM.fa felCat8_chrM_F.fq felCat8_chrM_R.fq value |
| Test-6 |
single_paired|forward: sacCer2_chrM_F.fq.gz single_paired|reverse: sacCer2_chrM_R.fq single_paired|single_paired_selector: paired_single pseudobam: True |
name: value name: value |
sacCer2_chrM_F.fq.gz sacCer2_chrM_R.fq value |
| Test-7 |
reference_transcriptome|reference: hg38_transcripts.fa reference_transcriptome|reference_transcriptome_source: history single_paired|forward: hg38_F.fq.gz single_paired|reverse: hg38_R.fq.gz single_paired|single_paired_selector: paired_single fusion: True |
name: value |
hg38_transcripts.fa hg38_F.fq.gz hg38_R.fq.gz value |
| Test-8 |
reference_transcriptome|reference: transcripts.fasta reference_transcriptome|reference_transcriptome_source: history single_paired|forward: reads_forward.fastq.gz single_paired|reverse: reads_reverse.fastq.gz single_paired|single_paired_selector: paired_single genomebam_option|gtf: annotation.gtf.gz genomebam_option|chromosomes: chromosome_size.tabular genomebam_option|selector: --genomebam |
name: value |
transcripts.fasta reads_forward.fastq.gz reads_reverse.fastq.gz annotation.gtf.gz chromosome_size.tabular value |