| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/artbio/small_rna_signatures/signature/3.5.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/artbio/small_rna_signatures/signature/3.0.0 |
| signature |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| numpy | 1.23.4 | package |
| pysam | 0.18.0 | package |
| r-optparse | 1.7.3 | package |
| r-latticeextra | 0.6_30 | package |
| r-gridextra | 2.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: sr_bowtie.bam minquery: 23 maxquery: 29 mintarget: 23 maxtarget: 29 minscope: 5 maxscope: 15 plot_options|plot_method: global |
name: value name: value name: value |
sr_bowtie.bam value |
| Test-2 |
input: sr_bowtie.bam minquery: 23 maxquery: 29 mintarget: 23 maxtarget: 29 minscope: 5 maxscope: 15 plot_options|npairs_ylim: 100 plot_options|npairszscore_ylim: 0 plot_options|overlapprob_ylim: 1 plot_options|overlapprobzscore_ylim: 4 plot_options|plot_method: global |
name: value name: value name: value |
sr_bowtie.bam value |
| Test-3 |
input: sr_bowtie.bam minquery: 23 maxquery: 29 mintarget: 23 maxtarget: 29 minscope: 5 maxscope: 15 plot_options|plot_method: lattice |
name: value name: value name: value |
sr_bowtie.bam value |