Galaxy |

Repository revision

Revision: 0:55b013e59018

Repository 'hicexplorer_hicinterintratad'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicinterintratad

hicInterIntraTAD tool metadata

Miscellaneous

Name: hicInterIntraTAD

Description: computes the ratio of inter TAD-scores vs. intra TADs

Id: hicexplorer_hicinterintratad

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicinterintratad/hicexplorer_hicinterintratad/3.7.2+galaxy0

Version: 3.7.2+galaxy0

Version command string: hicInterIntraTAD --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicinterintratad/hicexplorer_hicinterintratad/3.7.5+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicinterintratad/hicexplorer_hicinterintratad/3.7.2+galaxy0 (this tool)

hicexplorer_hicinterintratad

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.7.2

package

Functional tests

name

inputs

outputs

required files

Test-1

matrix_h5_cooler: hicInterIntraTAD/matrix.cool
tadDomains: hicInterIntraTAD/untreated_R1_domains_chr1_chr2.bed

name: value
name: value

hicInterIntraTAD/matrix.cool
hicInterIntraTAD/untreated_R1_domains_chr1_chr2.bed
value