Repository revision
17:5b85006245f3

Repository 'alphafold2'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2

Alphafold 2 tool metadata
Miscellaneous
Alphafold 2
- AI-guided 3D structural prediction of proteins
alphafold
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.3.1+galaxy3
2.3.1+galaxy3
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.3.1+galaxy4
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.3.1+galaxy3 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.3.1+galaxy2
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.3.1+galaxy1
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.3.1+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.2+galaxy4
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.2+galaxy3
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.2+galaxy2
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.2+galaxy1
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.1.2+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.0.0+galaxy2
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.0.0+galaxy1
toolshed.g2.bx.psu.edu/repos/galaxy-australia/alphafold2/alphafold/2.0.0+galaxy0
alphafold
Requirements (dependencies defined in the <requirements> tag set)
No requirements defined
Functional tests
name inputs outputs required files
Test-1 fasta_or_text|fasta_file: test1.fasta
fasta_or_text|input_mode: history
model_preset: monomer
name: value
name: value
name: value
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test1.fasta
value
Test-2 fasta_or_text|fasta_file: test1.fasta
fasta_or_text|input_mode: history
model_preset: monomer
outputs|plots: True
outputs|confidence_scores: True
outputs|plddts: True
outputs|pae_csv: True
outputs|model_pkls: True
outputs|relax_json: True
name: value
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test1.fasta
value
Test-3 fasta_or_text|fasta_file: test1.fasta
fasta_or_text|input_mode: history
model_preset: monomer_ptm
outputs|plots: True
outputs|confidence_scores: True
outputs|plddts: True
outputs|pae_csv: True
outputs|model_pkls: True
outputs|relax_json: True
name: value
name: value
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test1.fasta
value
Test-4 fasta_or_text|fasta_file: multimer.fasta
fasta_or_text|input_mode: history
model_preset: multimer
outputs|plots: True
outputs|confidence_scores: True
outputs|plddts: True
outputs|pae_csv: True
outputs|model_pkls: True
outputs|relax_json: True
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multimer.fasta
value