| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/blastxml_to_tabular_selectable/blastxml_to_tabular_selectable/1.0.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/blastxml_to_tabular_selectable/blastxml_to_tabular_selectable/0.0.9 |
| blastxml_to_tabular_selectable |
| Requirements (dependencies defined in the <requirements> tag set) |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
output|out_format: std blastxml_file: blastp_rhodopsin_proteins.xml |
tabular_file: blastp_rhodopsin_proteins_std.tabular |
blastp_rhodopsin_proteins.xml blastp_rhodopsin_proteins_std.tabular |
| Test-2 |
output|out_format: ext blastxml_file: blastp_rhodopsin_proteins.xml |
tabular_file: blastp_rhodopsin_proteins_ext.tabular |
blastp_rhodopsin_proteins.xml blastp_rhodopsin_proteins_ext.tabular |
| Test-3 |
output|columns: ['qseqid', 'sseqid', 'length', 'bitscore'] output|out_format: cols blastxml_file: blastp_rhodopsin_proteins.xml |
tabular_file: blastp_rhodopsin_proteins_selcol.tabular |
blastp_rhodopsin_proteins.xml blastp_rhodopsin_proteins_selcol.tabular |
| Test-4 |
maxhits: 10 maxhsps: 10 output|out_format: ext blastxml_file: blastp_rhodopsin_proteins.xml |
tabular_file: blastp_rhodopsin_proteins_ext_allhits.tabular |
blastp_rhodopsin_proteins.xml blastp_rhodopsin_proteins_ext_allhits.tabular |
| Test-5 |
blastxml_file: blastp_rhodopsin_proteins.xml maxhits: 1 unmatched: True allqueries: True maxhsps: 1 output|out_format: ext |
tabular_file: blastp_rhodopsin_proteins_ext_allqueries.tabular unmatched_file: unmatched_queries.tabular |
blastp_rhodopsin_proteins.xml blastp_rhodopsin_proteins_ext_allqueries.tabular unmatched_queries.tabular |