Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.5+galaxy2 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.5+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.4+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.4+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.3+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.3+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.15.3+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.3 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.2 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0.1 |
toolshed.g2.bx.psu.edu/repos/iuc/rnaspades/rnaspades/3.9.0 |
rnaspades |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
spades | 3.15.5 | package |
zip | 3.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
singlePaired|input1: ecoli_1K.fastq.gz singlePaired|sPaired: paired_interlaced |
name: value |
ecoli_1K.fastq.gz value |
Test-2 |
singlePaired|input1: ecoli_1K_1.fastq.gz singlePaired|input2: ecoli_1K_2.fastq.gz singlePaired|sPaired: paired phred_offset: 33 ss: fr optional_output: ['hft', 'l', 'sft', 'tr', 'tp'] |
name: value name: value name: value name: value name: value |
ecoli_1K_1.fastq.gz ecoli_1K_2.fastq.gz value |
Test-3 |
singlePaired|input1: ecoli_1K_1.fasta.gz singlePaired|input2: ecoli_1K_2.fasta.gz singlePaired|sPaired: paired |
name: value |
ecoli_1K_1.fasta.gz ecoli_1K_2.fasta.gz value |
Test-4 |
singlePaired|input: list:paired collection singlePaired|sPaired: paired_collection |
name: value |
ecoli_1K_1.fastq.gz ecoli_1K_2.fastq.gz value |
Test-5 |
singlePaired|input1: ecoli_1K_1.fasta.gz singlePaired|input2: ecoli_1K_2.fasta.gz singlePaired|sPaired: paired arf|flrna: ecoli_1K.fasta.gz arf|nanopore: ecoli_1K.fastq.gz arf|pacbio: ecoli_1K.fastq.gz arf|trusted_contigs: ecoli_1K.fasta.gz |
name: value |
ecoli_1K_1.fasta.gz ecoli_1K_2.fasta.gz ecoli_1K.fasta.gz ecoli_1K.fastq.gz value |