| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdifferentialtad/hicexplorer_hicdifferentialtad/3.7.2+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdifferentialtad/hicexplorer_hicdifferentialtad/3.6+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicdifferentialtad/hicexplorer_hicdifferentialtad/3.6+galaxy0 |
| hicexplorer_hicdifferentialtad |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicexplorer | 3.7.2 | package |
| Additional information about this tool |
ln -s '$matrix_h5_cooler_target' 'matrix_target.$matrix_h5_cooler_target.ext' &&
ln -s '$matrix_h5_cooler_control' 'matrix_control.$matrix_h5_cooler_control.ext' &&
hicDifferentialTAD
--targetMatrix 'matrix_target.$matrix_h5_cooler_target.ext'
--controlMatrix 'matrix_control.$matrix_h5_cooler_control.ext'
#if $tadDomains:
--tadDomains '$tadDomains'
#end if
#if $pValue:
--pValue $pValue
#end if
--mode $mode_selector
--modeReject $modeReject
--outFileNamePrefix galaxy_differential_tad
--threads \${GALAXY_SLOTS:-4}
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
matrix_h5_cooler_target: small_test_matrix.cool matrix_h5_cooler_control: small_test_matrix.cool tadDomains: hicDifferentialTAD/multiNone_domains.bed pValue: 1.0 mode_selector: all modeReject: one |
name: value name: value |
small_test_matrix.cool hicDifferentialTAD/multiNone_domains.bed value |