Repository revision
0:7acd9ade2dd1

Repository 'links'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/links

LINKS tool metadata
Miscellaneous
LINKS
- scaffold genome assemblies with long reads
links
toolshed.g2.bx.psu.edu/repos/iuc/links/links/2.0.1+galaxy+1
2.0.1+galaxy+1
LINKS | grep "LINKS v" | cut -d' ' -f4
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/links/links/2.0.1+galaxy+1 (this tool)
links
Requirements (dependencies defined in the <requirements> tag set)
name version type
links 2.0.1 package
Functional tests
name inputs outputs required files
Test-1 f: used_contigs.fasta.gz
reads: reads.fasta.gz
name: value
name: value
name: value
used_contigs.fasta.gz
reads.fasta.gz
value
Test-2 f: used_contigs.fasta.gz
reads: ['reads1.fasta.gz', 'reads2.fasta.gz']
name: value
name: value
used_contigs.fasta.gz
reads1.fasta.gz
reads2.fasta.gz
value
Test-3 f: used_contigs.fasta.gz
reads: reads.fasta.gz
scaffolding|k: 19
scaffolding|d: 500,1000,2000,3000
scaffolding|t: 10,5
name: value
name: value
used_contigs.fasta.gz
reads.fasta.gz
value
Test-4 f: used_contigs.fasta.gz
reads: reads.fasta.gz
advanced|a: 0.2
advanced|e: 0.05
advanced|l: 10
advanced|o: 1
advanced|z: 600
name: value
name: value
name: value
used_contigs.fasta.gz
reads.fasta.gz
value