Galaxy |

ampvis2 ordination plot tool metadata

Miscellaneous

Name: ampvis2 ordination plot

Description:

Id: ampvis2_ordinate

Guid: toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.8.6+galaxy1

Version: 2.8.6+galaxy1

Version command string: echo $(R --version | grep "R version")", ampvis2 version" $(R --vanilla --slave -e "library(ampvis2, quietly = TRUE); sessionInfo()\$otherPkgs\$ampvis2\$Version" 2> /dev/null | grep -v -i "WARNING: ")

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.8.6+galaxy2

toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.8.6+galaxy1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.8.6+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.7.22+galaxy1

toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.7.22+galaxy0

toolshed.g2.bx.psu.edu/repos/iuc/ampvis2_ordinate/ampvis2_ordinate/2.7.17+galaxy0

ampvis2_ordinate

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

r-ampvis2

2.8.6

package

r-readr

2.1.5

package

bioconductor-phyloseq

1.46.0

package

Functional tests

name

inputs

outputs

required files

Test-1

data: AalborgWWTPs.rds
output_screeplot: True

name: value
name: value

AalborgWWTPs.rds
value

Test-2

data: AalborgWWTPs.rds
metadata_list: AalborgWWTPs-metadata.list
type_cond|transform: chi.square
type_cond|constrain: Plant
type_cond|type: RDA

name: value

AalborgWWTPs.rds
AalborgWWTPs-metadata.list
value

Test-3

data: AalborgWWTPs-complete.rds
metadata_list: AalborgWWTPs-metadata.list
type_cond|distmeasure: unifrac
type_cond|type: MMDS

name: value

AalborgWWTPs-complete.rds
AalborgWWTPs-metadata.list
value

Test-4

data: AalborgWWTPs.rds
metadata_list: AalborgWWTPs-metadata.list
sample_color_by: Year
sample_shape_by: Plant
sample_colorframe: Year
sample_colorframe_label: Year

name: value

AalborgWWTPs.rds
AalborgWWTPs-metadata.list
value

Test-5

data: AalborgWWTPs.rds
metadata_list: AalborgWWTPs-metadata.list
sample_label_by: Plant
sample_trajectory: Year

name: value

AalborgWWTPs.rds
AalborgWWTPs-metadata.list
value

Test-6

data: AalborgWWTPs.rds
metadata_list: AalborgWWTPs-metadata.list
sample_trajectory_group: Plant

name: value

AalborgWWTPs.rds
AalborgWWTPs-metadata.list
value

Test-7

data: AalborgWWTPs.rds
metadata_list: AalborgWWTPs-metadata.list
species_plot_cond|species_nlabels: 2
species_plot_cond|species_label_taxonomy: Family
species_plot_cond|species_label_size: 4
species_plot_cond|species_plot: TRUE

name: value

AalborgWWTPs.rds
AalborgWWTPs-metadata.list
value

Test-8

data: AalborgWWTPs.rds
metadata_list: AalborgWWTPs-metadata.list
envfit_factor: Plant

name: value

AalborgWWTPs.rds
AalborgWWTPs-metadata.list
value

Test-9

data: AalborgWWTPs.rds
metadata_list: AalborgWWTPs-metadata.list
envfit_numeric: Year

name: value

AalborgWWTPs.rds
AalborgWWTPs-metadata.list
value