Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.55+galaxy4 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.55+galaxy3 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.55+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.55+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.55+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.53+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/stacks2_denovomap/stacks2_denovomap/2.4+galaxy0 |
stacks2_denovomap |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
stacks | 2.55 | package |
python | 3.7 | package |
findutils | 4.6.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
input_type|fqinputs: list:paired collection input_type|input_type_select: paired popmap: denovo_map/popmap_cstacks.tsv |
name: value name: value name: value name: value name: value name: value |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_01.2.fq demultiplexed/PopA_02.1.fq demultiplexed/PopA_02.2.fq denovo_map/popmap_cstacks.tsv value |
Test-2 |
input_type|fqinputs: ['demultiplexed/PopA_01.1.fq', 'demultiplexed/PopA_02.1.fq'] input_type|input_type_select: single popmap: denovo_map/popmap_cstacks.tsv |
name: value name: value name: value name: value name: value name: value |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq denovo_map/popmap_cstacks.tsv value |
Test-3 |
input_type|fqinputs: list collection input_type|input_type_select: paired popmap: denovo_map/popmap_cstacks.tsv assembly_options|M: 3 assembly_options|n: 3 model_options|var_alpha: 0.1 model_options|gt_alpha: 0.1 pe_options|rm_pcr_duplicates: True popfilter_options|min_samples_per_pop: 1 popfilter_options|min_populations: 0 |
name: value name: value name: value name: value name: value name: value |
demultiplexed/PopA_01.1.fq demultiplexed/PopA_02.1.fq denovo_map/popmap_cstacks.tsv value |