Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.10.3+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.5+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.7.4+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy4 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy3 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy2 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy1 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.22.post1+galaxy0 |
toolshed.g2.bx.psu.edu/repos/iuc/anndata_import/anndata_import/0.6.19+galaxy0 |
anndata_import |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
anndata | 0.10.3 | package |
loompy | 3.0.6 | package |
scanpy | 1.9.6 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
hd5_format|in|input: krumsiek11.loom hd5_format|in|sparse: True hd5_format|in|cleanup: False hd5_format|in|x_name: spliced hd5_format|in|obs_names: CellID hd5_format|in|var_names: Gene hd5_format|in|adata_format: loom |
name: value |
krumsiek11.loom value |
Test-2 |
hd5_format|in|input: adata.csv hd5_format|in|first_column_names: True hd5_format|in|adata_format: tabular |
name: value |
adata.csv value |
Test-3 |
hd5_format|in|input: adata.tsv hd5_format|in|first_column_names: True hd5_format|in|adata_format: tabular |
name: value |
adata.tsv value |
Test-4 |
hd5_format|in|matrix: matrix_10x_v1.2.0.mtx hd5_format|in|tenx|use: no hd5_format|in|adata_format: mtx |
name: value |
matrix_10x_v1.2.0.mtx value |
Test-5 |
hd5_format|in|matrix: matrix_10x_v1.2.0.mtx hd5_format|in|tenx|genes: genes_10x_v1.2.0.tsv hd5_format|in|tenx|barcodes: barcodes_10x_v1.2.0.tsv hd5_format|in|tenx|var_names: gene_symbols hd5_format|in|tenx|make_unique: True hd5_format|in|tenx|gex_only: True hd5_format|in|tenx|use: legacy_10x hd5_format|in|adata_format: mtx |
name: value |
matrix_10x_v1.2.0.mtx genes_10x_v1.2.0.tsv barcodes_10x_v1.2.0.tsv value |
Test-6 |
hd5_format|in|matrix: matrix_10x_v3.0.0.mtx hd5_format|in|tenx|features: features_10x_v3.0.0.tsv hd5_format|in|tenx|barcodes: barcodes_10x_v3.0.0.tsv hd5_format|in|tenx|var_names: gene_symbols hd5_format|in|tenx|make_unique: True hd5_format|in|tenx|gex_only: True hd5_format|in|tenx|use: v3_10x hd5_format|in|adata_format: mtx |
name: value |
matrix_10x_v3.0.0.mtx features_10x_v3.0.0.tsv barcodes_10x_v3.0.0.tsv value |
Test-7 |
hd5_format|in|input: umi_tools.tsv hd5_format|in|adata_format: umi_tools hd5_format|filetype: anndata |
name: value |
umi_tools.tsv value |
Test-8 |
hd5_format|mainmatrix: firstlayer.tsv hd5_format|other_files: secondlayer.tsv hd5_format|coldata: cols.tsv hd5_format|rowdata: rows.tsv hd5_format|filetype: loom |
name: value |
firstlayer.tsv secondlayer.tsv cols.tsv rows.tsv value |
Test-9 |
hd5_format|in|input: dropletutils_input.h5 hd5_format|in|adata_format: 10x_h5 hd5_format|filetype: anndata |
name: value |
dropletutils_input.h5 value |