| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.4.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.2.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/2.0.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.1.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.8.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.7.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotmatrix/hicexplorer_hicplotmatrix/1.7.1.0 |
| hicexplorer_hicplotmatrix |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicexplorer | 2.1.2 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
pca_conditional|pca_type: log1p: True region: chrX:3000000-3500000 image_file_format: png region2: chrX:3100000-3600000 matrix_h5_cooler: Li_et_al_2015.h5 clearMaskedBins: True |
outFileName: master_matrix_plot.png |
Li_et_al_2015.h5 master_matrix_plot.png |
| Test-2 |
pca_conditional|pca_type: region: X:3000000-3500000 matrix_h5_cooler: Li_et_al_2015.cool image_file_format: png |
outFileName: Li_chrX30-35_cool.png |
Li_et_al_2015.cool Li_chrX30-35_cool.png |
| Test-3 |
perChromosome: True pca_conditional|pca_bigwig: pca1.bw colormap: hot pca_conditional|pca_type: bigwig image_file_format: svg matrix_h5_cooler: pearson_small_50kb.cool |
outFileName: small_matrix_50kb_pearson_pca1_plot.svg |
pearson_small_50kb.cool pca1.bw small_matrix_50kb_pearson_pca1_plot.svg |
| Test-4 |
perChromosome: True pca_conditional|pca_bigwig: pca1.bw colormap: hot pca_conditional|pca_type: bigwig image_file_format: svg matrix_h5_cooler: pearson_small_50kb.h5 |
outFileName: small_matrix_50kb_pearson_pca1_plot.svg |
pearson_small_50kb.h5 pca1.bw small_matrix_50kb_pearson_pca1_plot.svg |