| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.9+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/samtools_fastx/samtools_fastx/1.3.1 (this tool) |
| samtools_fastx |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| samtools | 1.3.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
output|output_format: fasta input: samtools_fastx-in1.bam |
nonspecific: samtools_fastx-out1-1.fasta forward: samtools_fastx-out1-2.fasta reverse: samtools_fastx-out1-3.fasta |
samtools_fastx-in1.bam samtools_fastx-out1-1.fasta samtools_fastx-out1-2.fasta samtools_fastx-out1-3.fasta |
| Test-2 |
output|output_format: fastq input: samtools_fastx-in2.bam |
nonspecific: samtools_fastx-out2-1.fastq forward: samtools_fastx-out2-2.fastq reverse: samtools_fastx-out2-3.fastq |
samtools_fastx-in2.bam samtools_fastx-out2-1.fastq samtools_fastx-out2-2.fastq samtools_fastx-out2-3.fastq |
| Test-3 |
output|output_format: fasta input: samtools_fastx-in3.sam |
nonspecific: samtools_fastx-out3-1.fasta forward: samtools_fastx-out3-2.fasta reverse: samtools_fastx-out3-3.fasta |
samtools_fastx-in3.sam samtools_fastx-out3-1.fasta samtools_fastx-out3-2.fasta samtools_fastx-out3-3.fasta |