Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.28.0+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.16.2+galaxy2 |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.16.2+galaxy1 |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.16.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.2+galaxy3 |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.2+galaxy2 |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.2+galaxy1 |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.2+galaxy0 |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.0+galaxy1 |
toolshed.g2.bx.psu.edu/repos/computational-metabolomics/mspurity_averagefragspectra/mspurity_averagefragspectra/1.12.0+galaxy0 |
mspurity_averagefragspectra |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
bioconductor-mspurity | 1.28.0 | package |
bioconductor-camera | 1.58.0 | package |
bioconductor-xcms | 4.0.0 | package |
bioconductor-mspuritydata | 1.30.0 | package |
r-optparse | 1.7.5 | package |
r-rpostgres | 1.4.7 | package |
r-rmysql | 0.10.27 | package |
Additional information about this tool |
Rscript '$__tool_directory__/averageFragSpectra.R' --out_rdata='$averageFragSpectra_output_rdata' --out_peaklist='$averageFragSpectra_output_tsv' --pa='$pa' --av_level=$av_level --cores=\${GALAXY_SLOTS:-4} --minfrac=$minfrac --minnum=$minnum --ppm=$ppm --snr=$snr --ra=$ra --av=$av $sumi $rmp
Functional tests |
name | inputs | outputs | required files |
Test-1 |
pa: filterFragSpectra_output.RData av_level: intra |
name: value name: value |
filterFragSpectra_output.RData value |
Test-2 |
pa: averageFragSpectra_output_intra.RData av_level: inter |
name: value name: value |
averageFragSpectra_output_intra.RData value |
Test-3 |
pa: frag4feature_output.RData av_level: all |
name: value name: value |
frag4feature_output.RData value |
Test-4 |
pa: averageFragSpectra_output_inter.RData av_level: all |
name: value name: value |
averageFragSpectra_output_inter.RData value |