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Repository revision

Revision: 2:b15aaad44ab8

Repository 'deeptools_plot_pca'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca

plotPCA tool metadata

Miscellaneous

Name: plotPCA

Description: Generate principal component analysis (PCA) plots from multiBamSummary or multiBigwigSummary output

Id: deeptools_plot_pca

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.1.0.0

Version: 2.1.0.0

Version command string: plotPCA --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.2.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.1.0.0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_plot_pca/deeptools_plot_pca/2.0.1.0

deeptools_plot_pca

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

python

2.7.10

package

plotPCA

not provided

binary

deepTools

2.1.0

package

Functional tests

name

inputs

outputs

required files

Test-1

plotTitle: Test Plot
outFileFormat: png
corData: multiBamSummary_result2.npz

outFileName: plotPCA_result1.png

multiBamSummary_result2.npz
plotPCA_result1.png