Galaxy |

scHicCluster tool metadata

Miscellaneous

Name: scHicCluster

Description: clusters single-cell Hi-C interaction matrices on the raw data

Id: schicexplorer_schiccluster

Guid: toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/4.1

Version: 4.1

Version command string: scHicCluster --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/4.1 (this tool)

toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/4.0

toolshed.g2.bx.psu.edu/repos/iuc/schicexplorer_schiccluster/schicexplorer_schiccluster/1.0

schicexplorer_schiccluster

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

schicexplorer

package

Functional tests

name

inputs

outputs

required files

Test-1

matrix_scooler: test_matrix.scool
clusterMethod_selector: kmeans
dimensionReductionMethod_selector: none
numberOfClusters: 7

name: value

test_matrix.scool
value

Test-2

matrix_scooler: test_matrix.scool
clusterMethod_selector: kmeans
dimensionReductionMethod_selector: none
numberOfClusters: 7
chromosomes: chr1 chr2

name: value

test_matrix.scool
value

Test-3

matrix_scooler: test_matrix.scool
clusterMethod_selector: spectral
dimensionReductionMethod_selector: knn
numberOfClusters: 7

name: value

test_matrix.scool
value

Test-4

matrix_scooler: test_matrix.scool
clusterMethod_selector: spectral
dimensionReductionMethod_selector: pca
numberOfClusters: 7

name: value

test_matrix.scool
value