Repository revision
8:c0caca5af183

Repository 'khmer_abundance_distribution'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution

khmer: Abundance Distribution tool metadata
Miscellaneous
Calculate abundance distribution of k-mers using pre-made k-mer countgraphs
khmer_abundance_distribution
toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution/khmer_abundance_distribution/3.0.0a3+galaxy2
3.0.0a3+galaxy2
abundance-dist.py --version 2>&1 | tail -n 1 | cut -d ' ' -f 2
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution/khmer_abundance_distribution/3.0.0a3+galaxy2 (this tool)
toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution/khmer_abundance_distribution/3.0.0a3+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution/khmer_abundance_distribution/3.0.0a1.0
toolshed.g2.bx.psu.edu/repos/iuc/khmer_abundance_distribution/khmer_abundance_distribution/2.0.0
khmer_abundance_distribution
Requirements (dependencies defined in the <requirements> tag set)
name version type
khmer 3.0.0a3 package
Functional tests
name inputs outputs required files
Test-1 input_countgraph_filename: test-abund-read-2.oxlicg
input_sequence_filename: test-abund-read-2.fa
zero: False
name: value
test-abund-read-2.oxlicg
test-abund-read-2.fa
value
Test-2 input_countgraph_filename: test-abund-read-2.oxlicg
input_sequence_filename: test-abund-read-2.fa.gz
zero: False
bigcount: False
name: value
test-abund-read-2.oxlicg
test-abund-read-2.fa.gz
value