Repository revision
29:d9a637e83828

Repository 'deeptools_compute_matrix'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix

computeMatrix tool metadata
Miscellaneous
prepares data for plotting a heatmap or a profile of given regions
deeptools_compute_matrix
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.5.2+galaxy0
3.5.2+galaxy0
computeMatrix --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.5.4+galaxy0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.5.2+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.5.1.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.3.2.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.3.0.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.2.1.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.2.0.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.1.2.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.1.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/3.0.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.7.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.1.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.5.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.4.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.3.6.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.3.5.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.2.3.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.2.2.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.1.0.0
toolshed.g2.bx.psu.edu/repos/bgruening/deeptools_compute_matrix/deeptools_compute_matrix/2.0.1.0
deeptools_compute_matrix
Requirements (dependencies defined in the <requirements> tag set)
name version type
deeptools 3.5.2 package
samtools 1.9 package
Functional tests
name inputs outputs required files
Test-1 regionsFiles_0|regionsFile: computeMatrix1.bed
multibigwig_conditional|bigwigfiles: bamCoverage_result4.bw
mode|beforeRegionStartLength: 10
mode|afterRegionStartLength: 10
mode|mode_select: reference-point
advancedOpt|binSize: 10
advancedOpt|sortUsing: sum
advancedOpt|averageTypeBins: sum
advancedOpt|showAdvancedOpt: yes
name: value
computeMatrix1.bed
bamCoverage_result4.bw
value
Test-2 regionsFiles_0|regionsFile: computeMatrix2.bed
multibigwig_conditional|bigwigfiles: computeMatrix2.bw
mode|beforeRegionStartLength: 10
mode|afterRegionStartLength: 10
mode|mode_select: reference-point
advancedOpt|binSize: 10
advancedOpt|showAdvancedOpt: yes
name: value
computeMatrix2.bed
computeMatrix2.bw
value
Test-3 regionsFiles_0|regionsFile: computeMatrix2.bed
multibigwig_conditional|bigwigfiles: computeMatrix2.bw
mode|mode_select: scale-regions
advancedOpt|showAdvancedOpt: yes
name: value
computeMatrix2.bed
computeMatrix2.bw
value