| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/2.0.0.8.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/rnateam/mirdeep2_mapper/rbc_mirdeep2_mapper/2.0.0 |
| rbc_mirdeep2_mapper |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| mirdeep2 | 2.0.0.8 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
operation|refGenomeSource|ownFile: cel_cluster.fa input|reads: reads.fa discard_short_reads: 18 clip_adapter|adapter_seq: TCGTATGCCGTCTTCTGCTTGT operation|refGenomeSource|genomeSource: history clip_adapter|clip: true operation|collapse_map: collapse_and_map input|type: single remove_non_canon: True |
output_reads_collapsed: None output_mapping: None |
reads.fa cel_cluster.fa |
| Test-2 |
operation|collapse_map: collapse_and_map operation|refGenomeSource|ownFile: cel_cluster.fa input|reads_list_0|reads: reads_sample1.fa discard_short_reads: 18 clip_adapter|adapter_seq: TCGTATGCCGTCTTCTGCTTGT operation|refGenomeSource|genomeSource: history input|reads_list_0|sample_name: sa1 input|reads_list_1|reads: reads_sample2.fa input|reads_list_1|sample_name: sa2 input|type: multiple remove_non_canon: True clip_adapter|clip: true |
output_reads_collapsed: None output_mapping: None |
reads_sample1.fa reads_sample2.fa cel_cluster.fa |