| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/2.10.0.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/2.6.0.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/2.4.0.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.3 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.2 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.1 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_segmentations/cardinal_segmentations/1.12.1.0 |
| cardinal_segmentations |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-cardinal | 2.10.0 | package |
| r-gridextra | 2.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: segm_cond|segmentationtool: pca colours_0|feature_color: #ff00ff colours_1|feature_color: #0000FF |
name: value name: value name: value |
value |
| Test-2 |
infile: segm_cond|kmeans_r: 1:3 segm_cond|kmeans_k: 2,3 segm_cond|kmeans_toplabels: 20 segm_cond|segmentationtool: kmeans colours_0|feature_color: #ff00ff colours_1|feature_color: #0000FF colours_2|feature_color: #00C957 output_rdata: True |
name: value name: value name: value name: value |
value |
| Test-3 |
infile: preprocessed.RData segm_cond|centroids_r: 1,2 segm_cond|centroids_k: 3 segm_cond|centroids_toplabels: 50 segm_cond|segmentationtool: centroids colours_0|feature_color: #0000FF colours_1|feature_color: #00C957 colours_2|feature_color: #B0171F |
name: value name: value name: value |
preprocessed.RData value |
| Test-4 |
infile: processed_cond|accuracy: 200 processed_cond|units: ppm processed_cond|processed_file: processed segm_cond|centroids_r: 1 segm_cond|centroids_k: 2,3 segm_cond|centroids_s: 0,3 segm_cond|centroids_toplabels: 100 segm_cond|segmentationtool: centroids colours_0|feature_color: #0000FF colours_1|feature_color: #00C957 colours_2|feature_color: #B0171F |
name: value name: value name: value |
value |