Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/1.9.0+galaxy1 |
toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/1.5.1+galaxy0 (this tool) |
toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/1.3.0+galaxy2 |
toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/1.3.0+galaxy1 |
toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/0.14.1.2+galaxy1 |
toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/0.14.1.2 |
toolshed.g2.bx.psu.edu/repos/bgruening/alevin/alevin/0.14.1 |
alevin |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
salmon | 1.5.1 | package |
seqtk | 1.3 | package |
samtools | 1.12 | package |
vpolo | 0.2.0 | package |
pandas | 1.3.0 | package |
scipy | 1.7.0 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
refTranscriptSource|s_index|fasta: minitranscript.fa refTranscriptSource|TranscriptSource: history pairstraight|file1: fastqs/moreminifastq1.fastq.gz pairstraight|file2: fastqs/moreminifastq2.fastq.gz pairstraight|readselect: paired protocol: --chromium tgmap: minitxp.tsv optional|dumpFeatures: True optional|dumpMtx: True optional|keepCBFraction: 1 optional|freqThreshold: 5 |
name: value |
minitranscript.fa fastqs/moreminifastq1.fastq.gz fastqs/moreminifastq2.fastq.gz minitxp.tsv value |
Test-2 |
refTranscriptSource|s_index|fasta: minitranscript.fa refTranscriptSource|TranscriptSource: history pairstraight|file1: fastqs/moreminifastq1.fastq.gz pairstraight|file2: fastqs/moreminifastq2.fastq.gz pairstraight|readselect: paired protocol: --chromium tgmap: minitxp.tsv optional|dumpFeatures: True optional|dumpMtx: True optional|numCellBootstraps: 2 optional|keepCBFraction: 1 optional|freqThreshold: 5 |
name: value |
minitranscript.fa fastqs/moreminifastq1.fastq.gz fastqs/moreminifastq2.fastq.gz minitxp.tsv value |