| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/scater_filter/scater_filter/1.12.2 |
| toolshed.g2.bx.psu.edu/repos/iuc/scater_filter/scater_filter/1.10.1 (this tool) |
| scater_filter |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| bioconductor-scater | 1.10.1 | package |
| r-optparse | 1.6.2 | package |
| r-workflowscriptscommon | 0.0.4 | package |
| bioconductor-loomexperiment | 1.0.4 | package |
| r-mvoutlier | 2.0.9 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
filter_type|library_size: 100000 filter_type|filter_type_selector: manual input_loom: scater_qcready.loom filter_type|percent_counts_MT: 33.0 filter_type|detection_limit: 4 |
attributes: name |
scater_qcready.loom name |
| Test-2 |
filter_type|filter_type_selector: pca input_loom: scater_qcready.loom |
attributes: name |
scater_qcready.loom name |