| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy4 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3 |
| toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2 |
| toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3 |
| merqury |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| merqury | 1.3 | package |
| tar | 1.34 | package |
| findutils | 4.6.0 | package |
| coreutils | 9.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mode|meryldb_F1: child.meryldb mode|meryldb_PAT: pat.meryldb mode|meryldb_MAT: mat.meryldb mode|assembly_options|assembly_01: assembly.fasta.gz mode|assembly_options|number_assemblies: one mode|options: trio label: output_01 output_selector: sizes |
child.meryldb pat.meryldb mat.meryldb assembly.fasta.gz |
|
| Test-2 |
mode|meryldb_F1: read-db.meryldb mode|assembly_options|assembly_01: assembly.fasta.gz mode|assembly_options|number_assemblies: one mode|options: default label: output_02 output_selector: ['stats', 'plots', 'bed', 'sizes', 'qv', 'wig', 'hist'] |
read-db.meryldb assembly.fasta.gz |
|
| Test-3 |
mode|meryldb_F1: read-db.meryldb mode|assembly_options|assembly_01: assembly.fasta.gz mode|assembly_options|assembly_02: assembly_02.fasta.gz mode|assembly_options|number_assemblies: two mode|options: default label: output_03 output_selector: ['qv', 'stats'] |
read-db.meryldb assembly.fasta.gz assembly_02.fasta.gz |
|
| Test-4 |
mode|meryldb_F1: child.meryldb mode|meryldb_PAT: pat.meryldb mode|meryldb_MAT: mat.meryldb mode|assembly_options|assembly_01: assembly.fasta.gz mode|assembly_options|assembly_02: assembly_02.fasta.gz mode|assembly_options|number_assemblies: two mode|options: trio label: output_04 output_selector: qv |
child.meryldb pat.meryldb mat.meryldb assembly.fasta.gz assembly_02.fasta.gz |
|
| Test-5 |
mode|meryldb_F1: child.meryldb mode|meryldb_PAT: pat.meryldb mode|meryldb_MAT: mat.meryldb mode|assembly_options|assembly_01: assembly.fasta.gz mode|assembly_options|assembly_02: assembly_02.fasta.gz mode|assembly_options|number_assemblies: two mode|options: trio label: output_05 output_selector: ['qv', 'log'] |
name: value |
child.meryldb pat.meryldb mat.meryldb assembly.fasta.gz assembly_02.fasta.gz value |
| Test-6 |
mode|meryldb_F1: read-db.meryldb mode|assembly_options|assembly_01: assembly.fasta.gz mode|assembly_options|number_assemblies: one mode|options: default label: output_06 output_selector: ['stats', 'qv'] output_add_headers: True |
read-db.meryldb assembly.fasta.gz |