Repository revision
0:ebe2b2d82a32

Repository 'hicexplorer_hicplotaverageregions'
hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions

hicPlotAverageRegions tool metadata
Miscellaneous
compute distance vs Hi-C counts plot per chromosome
hicexplorer_hicplotaverageregions
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.3.1.0
3.3.1.0
hicPlotAverageRegions --version
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.4.1.0
toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicplotaverageregions/hicexplorer_hicplotaverageregions/3.3.1.0 (this tool)
hicexplorer_hicplotaverageregions
Requirements (dependencies defined in the <requirements> tag set)
name version type
hicexplorer 3.3.1 package
Functional tests
name inputs outputs required files
Test-1 matrix: hicAverageRegions/result_range_100000.npz
dpi: 10
colormap: RdYlBu_r
attributes: name
hicAverageRegions/result_range_100000.npz
name
Test-2 log: True
colormap: RdYlBu_r
dpi: 10
matrix: hicAverageRegions/result_range_100000.npz
attributes: name
hicAverageRegions/result_range_100000.npz
name
Test-3 log1p: True
matrix: hicAverageRegions/result_range_100000.npz
dpi: 10
colormap: RdYlBu_r
attributes: name
hicAverageRegions/result_range_100000.npz
name
Test-4 vMax: 20
vMin: 10
matrix: hicAverageRegions/result_range_100000.npz
dpi: 10
colormap: plasma
attributes: name
hicAverageRegions/result_range_100000.npz
name