Repository revision
0:f079716f598c

Repository 'smgu_frameshift_deletions_checks'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/smgu_frameshift_deletions_checks

Frameshift Deletions Checks tool metadata
Miscellaneous
reports on frameshifting indels in consensus sequence
smgu_frameshift_deletions_checks
toolshed.g2.bx.psu.edu/repos/iuc/smgu_frameshift_deletions_checks/smgu_frameshift_deletions_checks/0.3.9+galaxy0
0.3.9+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/iuc/smgu_frameshift_deletions_checks/smgu_frameshift_deletions_checks/0.3.9+galaxy1
toolshed.g2.bx.psu.edu/repos/iuc/smgu_frameshift_deletions_checks/smgu_frameshift_deletions_checks/0.3.9+galaxy0 (this tool)
smgu_frameshift_deletions_checks
Requirements (dependencies defined in the <requirements> tag set)
name version type
smallgenomeutilities 0.3.9 package
Functional tests
name inputs outputs required files
Test-1 consensus: consensus.bcftools.fasta.gz
input: REF_aln_trim.cram
reference: NC_045512.2.fasta.gz
genes: Genes_NC_045512.2.GFF3
name: value
consensus.bcftools.fasta.gz
REF_aln_trim.cram
NC_045512.2.fasta.gz
Genes_NC_045512.2.GFF3
value