| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.1 |
| toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/2.2.1.0 |
| toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/0.0.6 |
| toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/0.0.5 |
| toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/0.0.6 |
| toolshed.g2.bx.psu.edu/repos/devteam/cuffcompare/cuffcompare/0.0.5 |
| cuffcompare |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| cufflinks | 2.2.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputs: ['cuffcompare_in1.gtf', 'cuffcompare_in2.gtf'] max_dist_group: 100 seq_data|use_seq_data: No max_dist_exon: 100 annotation|ignore_nonoverlapping_reference: True annotation|ignore_nonoverlapping_transfrags: False discard_single_exon: discard_intron_redundant_transfrags: False annotation|use_ref_annotation: Yes annotation|reference_annotation: cuffcompare_in3.gtf |
attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name attributes: name |
cuffcompare_in1.gtf cuffcompare_in2.gtf cuffcompare_in3.gtf name |