| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.55+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.53+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.4+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/stacks2_cstacks/stacks2_cstacks/2.4+galaxy0 |
| stacks2_cstacks |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| stacks | 2.53 | package |
| python | 3.7 | package |
| findutils | 4.6.0 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
popmap: denovo_map/popmap_cstacks.tsv input_stacks: list collection add_log: True |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv denovo_map/popmap_cstacks.tsv name |
| Test-2 |
input_stacks: list collection add_log: True |
attributes: name |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv name |
| Test-3 |
report_mmatches: True input_stacks: list collection add_log: False k_len: 23 n: 2 |
ustacks/PopA_01.alleles.tsv ustacks/PopA_01.snps.tsv ustacks/PopA_01.tags.tsv ustacks/PopA_02.alleles.tsv ustacks/PopA_02.snps.tsv ustacks/PopA_02.tags.tsv |