| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/drep_compare/drep_compare/3.5.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/drep_compare/drep_compare/3.4.5+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/drep_compare/drep_compare/3.4.3+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/drep_compare/drep_compare/3.4.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/drep_compare/drep_compare/3.3.0+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/drep_compare/drep_compare/3.2.2+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/drep_compare/drep_compare/2.5.4.0 |
| drep_compare |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| drep | 3.4.5 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
genomes: ['Enterococcus_casseliflavus_EC20.fasta', 'Enterococcus_faecalis_T2.fna', 'Enterococcus_faecalis_TX0104.fa'] comp_clust|steps|MASH_sketch: 1000 comp_clust|steps|P_ani: 0.9 comp_clust|steps|multiround_primary_clustering: False comp_clust|steps|primary_chunksize: 5000 comp_clust|steps|clustering|n_PRESET: normal comp_clust|steps|clustering|coverage_method: larger comp_clust|steps|clustering|S_algorithm: ANImf comp_clust|steps|S_ani: 0.99 comp_clust|steps|cov_thresh: 0.1 comp_clust|steps|select: default comp_clust|clusterAlg: average comp_clust|run_tertiary_clustering: False warning|warn_dist: 0.25 warning|warn_sim: 0.98 warning|warn_aln: 0.25 select_outputs: ['log', 'warnings', 'Primary_clustering_dendrogram', 'Clustering_scatterplots'] |
name: value |
Enterococcus_casseliflavus_EC20.fasta Enterococcus_faecalis_T2.fna Enterococcus_faecalis_TX0104.fa value |
| Test-2 |
genomes: ['001', '002', '003'] comp_clust|steps|MASH_sketch: 1000 comp_clust|steps|P_ani: 0.9 comp_clust|steps|multiround_primary_clustering: False comp_clust|steps|primary_chunksize: 5000 comp_clust|steps|clustering|n_PRESET: normal comp_clust|steps|clustering|coverage_method: larger comp_clust|steps|clustering|S_algorithm: ANImf comp_clust|steps|S_ani: 0.99 comp_clust|steps|cov_thresh: 0.1 comp_clust|steps|select: default comp_clust|clusterAlg: average comp_clust|run_tertiary_clustering: False warning|warn_dist: 0.25 warning|warn_sim: 0.98 warning|warn_aln: 0.25 select_outputs: ['log', 'warnings', 'Primary_clustering_dendrogram', 'Clustering_scatterplots'] |
name: value |
001 002 003 value |