Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_normalize_shared/mothur_normalize_shared/1.39.5.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/mothur_normalize_shared/mothur_normalize_shared/1.36.1.0 |
mothur_normalize_shared |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
mothur | 1.39.5 | package |
Additional information about this tool |
set -o pipefail; export TERM=vt100; ## create symlinks to input datasets ln -s '$otu' otu.dat && echo 'normalize.shared( #if $otu.is_of_type("mothur.relabund"): relabund=otu.dat #elif $otu.is_of_type("mothur.shared"): shared=otu.dat, makerelabund=$makerelabund #end if #if $label: ,label=${ str($label).replace(",","-") } #end if #if $groups: ,groups=${ str($groups).replace(",","-") } #end if #if $method: ,method=${ str($method).replace(",","-") } #end if )' | sed 's/ //g' ## mothur trips over whitespace | mothur | tee mothur.out.log
Functional tests |
name | inputs | outputs | required files |
Test-1 |
otu: amazon.an.shared savelog: True |
name: value |
amazon.an.shared value |
Test-2 |
otu: amazon.an.relabund label: ['0.03', '0.05', '0.22', '0.26'] groups: ['forest', 'pasture'] method: zscore savelog: True |
name: value |
amazon.an.relabund value |