Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 |
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0 (this tool) |
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0 |
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.1.1 |
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.1 |
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.2.0 |
unicycler |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
unicycler | 0.4.6 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
graph_clean|min_component_size: 1000 linear_seqs: 0 paired_unpaired|fastq_input_selector: paired rotation|no_rotate: False paired_unpaired|fastq_input2: phix_r.fq.gz rotation|start_gene_id: 90 paired_unpaired|fastq_input1: phix_f.fq.gz rotation|start_gene_cov: 95 pilon|no_pilon: False lr_align|scores: 3,-6,-5,-2 spades|depth_filter: 0.25 min_fasta_length: 100 graph_clean|min_dead_end_size: 1000 spades|max_kmer_frac: 0.95 spades|kmer_count: 10 spades|min_kmer_frac: 0.2 pilon|min_polish_size: 1000 spades|no_correct: True mode: normal |
attributes: name attributes: name |
phix_f.fq.gz phix_r.fq.gz name |
Test-2 |
graph_clean|min_component_size: 1000 linear_seqs: 0 spades|min_kmer_frac: 0.2 paired_unpaired|fastq_input_selector: paired rotation|no_rotate: False paired_unpaired|fastq_input2: phix_r.fq.gz rotation|start_gene_cov: 95 paired_unpaired|fastq_input1: phix_f.fq.gz rotation|start_gene_id: 90 pilon|no_pilon: False long: onp.fa spades|depth_filter: 0.25 min_fasta_length: 100 graph_clean|min_dead_end_size: 1000 spades|max_kmer_frac: 0.95 spades|kmer_count: 10 mode: normal pilon|min_polish_size: 1000 spades|no_correct: True lr_align|scores: 3,-6,-5,-2 |
attributes: name attributes: name |
phix_f.fq.gz phix_r.fq.gz onp.fa name |
Test-3 |
graph_clean|min_component_size: 1000 linear_seqs: 0 paired_unpaired|fastq_input_selector: paired_collection rotation|no_rotate: False rotation|start_gene_id: 90 paired_unpaired|fastq_input1: paired collection rotation|start_gene_cov: 95 pilon|no_pilon: True lr_align|scores: 3,-6,-5,-2 spades|depth_filter: 0.25 min_fasta_length: 100 graph_clean|min_dead_end_size: 1000 spades|max_kmer_frac: 0.95 mode: normal spades|kmer_count: 10 pilon|min_polish_size: 1000 spades|no_correct: True spades|min_kmer_frac: 0.2 |
attributes: name attributes: name |
phix_f.fq.gz phix_r.fq.gz name |
Test-4 |
paired_unpaired|fastq_input_selector: none min_anchor_seg_len: 10 long: only_long.fasta spades|kmers: 21,23 |
attributes: name attributes: name |
only_long.fasta name |