| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.5.0+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.5.0+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.6.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.4.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.1.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.1 |
| toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.2.0 |
| unicycler |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| unicycler | 0.5.0 | package |
| samtools | 1.15.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
paired_unpaired|fastq_input1: phix_f.fq.gz paired_unpaired|fastq_input2: phix_r.fq.gz paired_unpaired|fastq_input_selector: paired mode: normal min_fasta_length: 100 linear_seqs: 0 spades|min_kmer_frac: 0.2 spades|max_kmer_frac: 0.95 spades|kmer_count: 10 spades|depth_filter: 0.25 rotation|no_rotate: False rotation|start_gene_id: 90 rotation|start_gene_cov: 95 graph_clean|min_component_size: 1000 graph_clean|min_dead_end_size: 1000 lr_align|scores: 3,-6,-5,-2 keep: 0 |
name: value name: value |
phix_f.fq.gz phix_r.fq.gz value |
| Test-2 |
paired_unpaired|fastq_input1: phix_f.fq.gz paired_unpaired|fastq_input2: phix_r.fq.gz paired_unpaired|fastq_input_selector: paired long: onp.fa mode: normal min_fasta_length: 100 linear_seqs: 0 spades|min_kmer_frac: 0.2 spades|max_kmer_frac: 0.95 spades|kmer_count: 10 spades|depth_filter: 0.25 rotation|no_rotate: False rotation|start_gene_id: 90 rotation|start_gene_cov: 95 graph_clean|min_component_size: 1000 graph_clean|min_dead_end_size: 1000 lr_align|scores: 3,-6,-5,-2 keep: 0 |
name: value name: value |
phix_f.fq.gz phix_r.fq.gz onp.fa value |
| Test-3 |
paired_unpaired|fastq_input1: paired collection paired_unpaired|fastq_input_selector: paired_collection mode: normal min_fasta_length: 100 linear_seqs: 0 spades|min_kmer_frac: 0.2 spades|max_kmer_frac: 0.95 spades|kmer_count: 10 spades|depth_filter: 0.25 rotation|no_rotate: False rotation|start_gene_id: 90 rotation|start_gene_cov: 95 graph_clean|min_component_size: 1000 graph_clean|min_dead_end_size: 1000 lr_align|scores: 3,-6,-5,-2 keep: 0 |
name: value name: value |
phix_f.fq.gz phix_r.fq.gz value |
| Test-4 |
paired_unpaired|fastq_input_selector: none long: only_long.fasta min_anchor_seg_len: 10 spades|kmers: 21,23 keep: 0 |
name: value name: value |
only_long.fasta value |
| Test-5 |
paired_unpaired|fastq_input1: phix_f.fq.gz paired_unpaired|fastq_input2: phix_r.fq.gz paired_unpaired|fastq_input_selector: paired mode: normal keep: 1 |
name: value name: value |
phix_f.fq.gz phix_r.fq.gz value |
| Test-6 |
paired_unpaired|fastq_input1: phix_f.fq.gz paired_unpaired|fastq_input2: phix_r.fq.gz paired_unpaired|fastq_input_selector: paired long: onp.fa mode: normal keep: 2 |
name: value name: value name: value |
phix_f.fq.gz phix_r.fq.gz onp.fa value |
| Test-7 |
paired_unpaired|fastq_input1: phix_f.fq.gz paired_unpaired|fastq_input2: phix_r.fq.gz paired_unpaired|fastq_input_selector: paired long: onp.fa mode: normal lr_align|no_simple_bridges: True keep: 0 |
name: value name: value |
phix_f.fq.gz phix_r.fq.gz onp.fa value |