| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/devteam/fastx_renamer/cshl_fastx_renamer/0.0.14+galaxy2 (this tool) |
| toolshed.g2.bx.psu.edu/repos/devteam/fastx_renamer/cshl_fastx_renamer/0.0.14+galaxy1 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastx_renamer/cshl_fastx_renamer/0.0.14+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/devteam/fastx_renamer/cshl_fastx_renamer/0.0.11 |
| cshl_fastx_renamer |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| fastx_toolkit | 0.0.14 | package |
| bzip2 | 1.0.8 | package |
| Additional information about this tool |
#if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
gunzip -c -f '$input' |
#elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
bzcat -f '$input' |
#else:
cat '$input' |
#end if
fastx_renamer
-n $TYPE
-v
#if $input.is_of_type('fastqsanger', 'fastqsanger.gz', 'fastqsanger.bz2'):
-Q 33
#elif $input.is_of_type('fastqsolexa', 'fastqsolexa.gz', 'fastqsolexa.bz2', 'fastqillumina', 'fastqillumina.gz', 'fastqillumina.bz2'):
-Q 64
#end if
#if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'):
| gzip -c
#elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'):
| bzip2 -c
#end if
> '$output'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
input: fastx_renamer-in1.fastq TYPE: SEQ |
name: value |
fastx_renamer-in1.fastq value |