| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/2.0.8.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/2.0.8.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.9.29.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.9.21.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.8.24.1 |
| toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond/0.1.6.0 |
| bg_diamond |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| diamond | 2.0.8 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
method_cond|method_select: blastp query: protein.fasta ref_db_source|reference_database: db-wtax.dmnd ref_db_source|db_source: history output|fields: ['qseqid', 'sseqid', 'pident', 'length', 'mismatch', 'gapopen', 'qstart', 'qend', 'sstart', 'send', 'evalue', 'bitscore', 'cigar', 'scovhsp', 'sskingdoms', 'skingdoms', 'sphylums'] output|outfmt: 6 sens_cond|block_size: 2 sens_cond|sensitivity: matrix: BLOSUM62 masking: True filter_score|evalue: 0.001 filter_score|filter_score_select: evalue hit_filter|max_target_seqs: 25 hit_filter|hit_filter_select: max id: 0 query_cover: 0 |
name: value |
protein.fasta db-wtax.dmnd value |
| Test-2 |
method_cond|method_select: blastp query: protein.fasta ref_db_source|reference_database: db-wtax.dmnd ref_db_source|db_source: history output|fields: ['qseqid', 'sseqid', 'pident', 'length', 'mismatch', 'gapopen', 'qstart', 'qend', 'sstart', 'send', 'evalue', 'bitscore'] output|outfmt: 6 sens_cond|block_size: 2 sens_cond|sensitivity: matrix: BLOSUM62 masking: True tax_cond|taxonlist: 2 tax_cond|tax_select: list filter_score|evalue: 0.001 filter_score|filter_score_select: evalue hit_filter|max_target_seqs: 25 hit_filter|hit_filter_select: max id: 0 query_cover: 0 |
name: value |
protein.fasta db-wtax.dmnd value |
| Test-3 |
method_cond|frameshift_cond|frameshift_select: yes method_cond|method_select: blastx query: nucleotide.fasta ref_db_source|reference_database: db.dmnd ref_db_source|db_source: history output|outfmt: 0 sens_cond|block_size: 2 sens_cond|sensitivity: matrix: BLOSUM62 masking: True filter_score|min_score: 1 filter_score|filter_score_select: min-score hit_filter|top: 10 hit_filter|hit_filter_select: top id: 0 query_cover: 0 |
name: value |
nucleotide.fasta db.dmnd value |
| Test-4 |
method_cond|method_select: blastp query: protein.fasta ref_db_source|reference_database: db-wtax.dmnd ref_db_source|db_source: history output|outfmt: 100 |
name: value |
protein.fasta db-wtax.dmnd value |
| Test-5 |
method_cond|frameshift_cond|frameshift_select: yes method_cond|method_select: blastx query: nucleotide.fasta ref_db_source|index: testDb ref_db_source|db_source: indexed output|outfmt: 0 sens_cond|block_size: 2 sens_cond|sensitivity: matrix: BLOSUM62 masking: True filter_score|min_score: 1 filter_score|filter_score_select: min-score hit_filter|top: 10 hit_filter|hit_filter_select: top id: 0 query_cover: 0 |
name: value |
nucleotide.fasta value |