| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond_makedb/2.1.11+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/diamond/bg_diamond_makedb/0.6.13 |
| bg_diamond_makedb |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| diamond | 2.1.11 | package |
| Additional information about this tool |
diamond makedb
--threads \${GALAXY_SLOTS:-12}
--in '$infile'
--db ./database
#if str($tax_cond.tax_select) == 'yes':
--taxonmap '$tax_cond.taxonmap'
--taxonnodes '$tax_cond.taxonnodes'
--taxonnames '$tax_cond.taxonnames'
#end if
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
infile: db.fasta |
name: value |
db.fasta value |
| Test-2 |
infile: db.fasta tax_cond|taxonmap: prot.accession2taxid tax_cond|taxonnodes: nodes.dmp tax_cond|taxonnames: names.dmp tax_cond|tax_select: yes |
name: value |
db.fasta prot.accession2taxid nodes.dmp names.dmp value |