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chicSignificantInteractions tool metadata

Miscellaneous

Name: chicSignificantInteractions

Description: computes viewpoints with the given reference points and a background model

Id: hicexplorer_chicsignificantinteractions

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.7.5+galaxy0

Version: 3.7.5+galaxy0

Version command string: chicSignificantInteractions --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.7.5+galaxy1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.7.5+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.7.2+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.6+galaxy1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.6+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.4.3.1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.4.3.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicsignificantinteractions/hicexplorer_chicsignificantinteractions/3.3.1.0

hicexplorer_chicsignificantinteractions

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.7.5

package

Functional tests

name

inputs

outputs

required files

Test-1

interactionFile: cHi-C/chicViewpoint/two_matrices.hdf5
pvalue: 0.2
filter_conditional|loosePvalue: 0.5
filter_conditional|filter_selector: optionLoosePvalue
backgroundModelFile: cHi-C/background.txt
mode_selector: dual
rangeUpstream: 200000
rangeDownstream: 200000

name: value
name: value

cHi-C/chicViewpoint/two_matrices.hdf5
cHi-C/background.txt
value