Galaxy |

Nanopolish polyA tool metadata

Miscellaneous

Name: Nanopolish polyA

Description: - Estimate the length of the poly-A tail on direct RNA reads.

Id: nanopolish_polya

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_polya/nanopolish_polya/0.13.2+galaxy0

Version: 0.13.2+galaxy0

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_polya/nanopolish_polya/0.14.0+galaxy0

toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_polya/nanopolish_polya/0.13.2+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_polya/nanopolish_polya/0.11.1

toolshed.g2.bx.psu.edu/repos/bgruening/nanopolish_polya/nanopolish_polya/0.1.0

nanopolish_polya

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

nanopolish

0.13.2

package

Functional tests

name

inputs

outputs

required files

Test-1

input_merged: 30xpolyA-small-subset.fastq
input_reads_raw: fast5_files_30xpolyA-small-subset.tar.gz
b: 30xpolyA-small-subset.sorted.bam
reference_source|ref_file: enolase_reference.fas
reference_source|reference_source_selector: history

name: value

30xpolyA-small-subset.fastq
fast5_files_30xpolyA-small-subset.tar.gz
30xpolyA-small-subset.sorted.bam
enolase_reference.fas
value

Test-2

name: value

30xpolyA-small-subset.fastq
fast5_files_30xpolyA-small-subset.tar.gz
30xpolyA-small-subset.sorted.bam
enolase_reference.fas
value

Test-3

input_merged: 30xpolyA-small-subset.fastq
input_reads_raw: fast5_files_30xpolyA-small-subset.tar
b: 30xpolyA-small-subset.sorted.bam
reference_source|ref_file: enolase_reference.fas
reference_source|reference_source_selector: history
w: YHR174W:600-900

name: value

30xpolyA-small-subset.fastq
fast5_files_30xpolyA-small-subset.tar
30xpolyA-small-subset.sorted.bam
enolase_reference.fas
value