| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.8+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.3.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.2.0 |
| toolshed.g2.bx.psu.edu/repos/galaxyp/openms_decoydatabase/DecoyDatabase/2.1.0 |
| DecoyDatabase |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| openms | 2.6 | package |
| openms-thirdparty | 2.6 | package |
| blast | 2.9.0 | package |
| ctdopts | 1.4 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
in: DecoyDatabase_1.fasta decoy_string: DECOY_ decoy_string_position: prefix only_decoy: True type: protein method: reverse enzyme: Trypsin Decoy|non_shuffle_pattern: Decoy|keepPeptideNTerm: True Decoy|keepPeptideCTerm: True adv_opts_cond|shuffle_max_attempts: 30 adv_opts_cond|shuffle_sequence_identity_threshold: 0.5 adv_opts_cond|seed: 1 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
DecoyDatabase_1.fasta value |
| Test-2 |
in: DecoyDatabase_1.fasta decoy_string: blabla decoy_string_position: prefix only_decoy: False type: protein method: shuffle enzyme: Trypsin Decoy|non_shuffle_pattern: KRP Decoy|keepPeptideNTerm: True Decoy|keepPeptideCTerm: True adv_opts_cond|shuffle_max_attempts: 30 adv_opts_cond|shuffle_sequence_identity_threshold: 0.5 adv_opts_cond|seed: 42 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
DecoyDatabase_1.fasta value |
| Test-3 |
in: DecoyDatabase_1.fasta decoy_string: blabla decoy_string_position: prefix only_decoy: False type: protein method: shuffle enzyme: Chymotrypsin Decoy|non_shuffle_pattern: KR Decoy|keepPeptideNTerm: True Decoy|keepPeptideCTerm: True adv_opts_cond|shuffle_max_attempts: 30 adv_opts_cond|shuffle_sequence_identity_threshold: 0.5 adv_opts_cond|seed: 42 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
DecoyDatabase_1.fasta value |
| Test-4 |
in: DecoyDatabase_4.fasta decoy_string: blabla decoy_string_position: prefix only_decoy: False type: RNA method: reverse enzyme: Trypsin Decoy|non_shuffle_pattern: Decoy|keepPeptideNTerm: True Decoy|keepPeptideCTerm: True adv_opts_cond|shuffle_max_attempts: 30 adv_opts_cond|shuffle_sequence_identity_threshold: 0.5 adv_opts_cond|seed: 42 adv_opts_cond|force: False adv_opts_cond|test: true adv_opts_cond|adv_opts_selector: advanced OPTIONAL_OUTPUTS: ctd_out_FLAG |
name: value name: value |
DecoyDatabase_4.fasta value |