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Repository revision

Revision: 7:9369e9b11b8d

Repository 'hicexplorer_hicfindrestrictionsites'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites

hicFindRestSite tool metadata

Miscellaneous

Name: hicFindRestSite

Description: identify restriction enzyme sites

Id: hicexplorer_hicfindrestrictionsites

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.6+galaxy0

Version: 3.6+galaxy0

Version command string: hicFindRestSite --version

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.6+galaxy1

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.6+galaxy0 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.4.3.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.4.2.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.4.1.0

toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_hicfindrestrictionsites/hicexplorer_hicfindrestrictionsites/3.3.1.0

hicexplorer_hicfindrestrictionsites

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

hicexplorer

3.6

package

Additional information about this tool

Command:

hicFindRestSite
            --fasta '$fasta'
            --searchPattern '$searchPattern'
            --outFile restriction_site.bed

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

fasta: hicFindRestrictionSites/reference_genome.fasta
searchPattern: GTAC

name: value

hicFindRestrictionSites/reference_genome.fasta
value