Repository revision

Revision: 25:9f03c8587d6b

Repository 'prims_metabolomics2'

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_metabolomics2

METAMS-LC/MS Annotate tool metadata

Miscellaneous

Name: METAMS-LC/MS Annotate

Description: Runs metaMS process for LC/MS feature annotation

Id: metams_lcms_annotate

Guid: toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_metabolomics2/metams_lcms_annotate/0.0.4

Version: 0.0.4

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/pieterlukasse/prims_metabolomics2/metams_lcms_annotate/0.0.4 (this tool)

metams_lcms_annotate

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

R_bioc_metams

3.1.1

package

Additional information about this tool

Command:

metaMS_cmd_annotate.r 
	    $constructed_db
	    $xsetData
	    $customMetaMSsettings
	    $outputFile 
	    #if $mzTol.mzTolType == "fixed"  
			0
		#else
            "$mzTol.mass_error_function"
		#end if
	    $htmlReportFile
	    $htmlReportFile.files_path
	    $outputLog

Interpreter: Rscript

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1