| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/hyphy_summary/hyphy_summary/2.5.47+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/hyphy_summary/hyphy_summary/1.2.0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/hyphy_summary/hyphy_summary/1.1.0 |
| toolshed.g2.bx.psu.edu/repos/iuc/hyphy_summary/hyphy_summary/1.0.0 |
| hyphy_summary |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| python-bioext | 0.20.1 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
mode_conditional|combined: summary/nsp8.combined.fas mode_conditional|labels: summary/nsp8.labels.json mode_conditional|gene: nsp8 mode_conditional|name: REFERENCE mode_conditional|fade: summary/nsp8.FADE.json mode_conditional|prime: summary/nsp8.PRIME.json mode_conditional|relax: summary/nsp8.RELAX.json mode_conditional|meme: summary/nsp8.MEME.json mode_conditional|meme_full: summary/nsp8.MEME-full.json mode_conditional|busted: summary/nsp8.BUSTED.json mode_conditional|slac: summary/nsp8.SLAC.json mode_conditional|fel: summary/nsp8.FEL.json mode_conditional|cfel: summary/nsp8.CFEL.json mode_conditional|bgm: summary/nsp8.combined.fas.BGM.json mode_conditional|mode: summary |
name: value name: value |
summary/nsp8.combined.fas summary/nsp8.labels.json summary/nsp8.FADE.json summary/nsp8.PRIME.json summary/nsp8.RELAX.json summary/nsp8.MEME.json summary/nsp8.MEME-full.json summary/nsp8.BUSTED.json summary/nsp8.SLAC.json summary/nsp8.FEL.json summary/nsp8.CFEL.json summary/nsp8.combined.fas.BGM.json value |
| Test-2 |
mode_conditional|combined: summary/ORF6.combined.fas mode_conditional|labels: summary/ORF6.labels.json mode_conditional|gene: ORF6 mode_conditional|name: REFERENCE mode_conditional|fade: summary/ORF6.FADE.json mode_conditional|meme_full: summary/ORF6.MEME-full.json mode_conditional|slac: summary/ORF6.SLAC.json mode_conditional|mode: summary |
name: value name: value |
summary/ORF6.combined.fas summary/ORF6.labels.json summary/ORF6.FADE.json summary/ORF6.MEME-full.json summary/ORF6.SLAC.json value |
| Test-3 |
mode_conditional|combined: summary/nsp7.combined.fas mode_conditional|labels: summary/nsp7.labels.json mode_conditional|gene: nsp7 mode_conditional|name: REFERENCE mode_conditional|fade: summary/nsp7.FADE.json mode_conditional|meme_full: summary/nsp7.MEME-full.json mode_conditional|slac: summary/nsp7.SLAC.json mode_conditional|mode: summary |
name: value name: value |
summary/nsp7.combined.fas summary/nsp7.labels.json summary/nsp7.FADE.json summary/nsp7.MEME-full.json summary/nsp7.SLAC.json value |
| Test-4 |
mode_conditional|summary_inputs: ['summary/nsp7-segment.json', 'summary/nsp8-segment.json', 'summary/ORF6-segment.json'] mode_conditional|annotation_inputs: ['summary/nsp7-site.json', 'summary/nsp8-site.json', 'summary/ORF6-site.json'] mode_conditional|mode: merge |
name: value name: value |
summary/nsp7-segment.json summary/nsp8-segment.json summary/ORF6-segment.json summary/nsp7-site.json summary/nsp8-site.json summary/ORF6-site.json value |