| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpoint/hicexplorer_chicviewpoint/3.6+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpoint/hicexplorer_chicviewpoint/3.4.3.1 (this tool) |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpoint/hicexplorer_chicviewpoint/3.4.3.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpoint/hicexplorer_chicviewpoint/3.4.2.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpoint/hicexplorer_chicviewpoint/3.4.1.0 |
| toolshed.g2.bx.psu.edu/repos/bgruening/hicexplorer_chicviewpoint/hicexplorer_chicviewpoint/3.3.1.0 |
| hicexplorer_chicviewpoint |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| hicexplorer | 3.4.3 | package |
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
matrix_h5_cooler_multiple: ['cHi-C/FL-E13-5_chr1.cool', 'cHi-C/MB-E10-5_chr1.cool'] referencePoints: cHi-C/referencePoints_chicViewpoint.bed rangeUpstream: 200000 rangeDownstream: 200000 backgroundModelFile: cHi-C/background.txt fixateRange: 500000 writeFileNamesToFile: True |
name: value |
cHi-C/FL-E13-5_chr1.cool cHi-C/MB-E10-5_chr1.cool cHi-C/referencePoints_chicViewpoint.bed cHi-C/background.txt value |
| Test-2 |
matrix_h5_cooler_multiple: ['cHi-C/FL-E13-5_chr1.cool', 'cHi-C/MB-E10-5_chr1.cool'] referencePoints: cHi-C/referencePoints_chicViewpoint.bed rangeUpstream: 200000 rangeDownstream: 200000 backgroundModelFile: cHi-C/background.txt fixateRange: 500000 writeFileNamesToFile: False |
cHi-C/FL-E13-5_chr1.cool cHi-C/MB-E10-5_chr1.cool cHi-C/referencePoints_chicViewpoint.bed cHi-C/background.txt |
|
| Test-3 |
matrix_h5_cooler_multiple: ['cHi-C/FL-E13-5_chr1.cool', 'cHi-C/MB-E10-5_chr1.cool'] referencePoints: cHi-C/referencePoints_chicViewpoint.bed rangeUpstream: 200000 rangeDownstream: 200000 backgroundModelFile: cHi-C/background.txt fixateRange: 500000 writeFileNamesToFile: True tar: True |
name: value name: value |
cHi-C/FL-E13-5_chr1.cool cHi-C/MB-E10-5_chr1.cool cHi-C/referencePoints_chicViewpoint.bed cHi-C/background.txt value |