| Miscellaneous |
| Version lineage of this tool (guids ordered most recent to oldest) |
| toolshed.g2.bx.psu.edu/repos/iuc/fasta_to_contig2bin/Fasta_to_Contig2Bin/1.1.7+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fasta_to_contig2bin/Fasta_to_Contig2Bin/1.1.6+galaxy0 (this tool) |
| toolshed.g2.bx.psu.edu/repos/iuc/fasta_to_contig2bin/Fasta_to_Contig2Bin/1.1.5+galaxy0 |
| toolshed.g2.bx.psu.edu/repos/iuc/fasta_to_contig2bin/Fasta_to_Contig2Bin/1.1.4+galaxy0 |
| Fasta_to_Contig2Bin |
| Requirements (dependencies defined in the <requirements> tag set) |
| name | version | type |
| das_tool | 1.1.6 | package |
| Additional information about this tool |
#import re
mkdir "inputs" &&
#for $i in $inputs
#set file_name = $i.file_name
#set identifier = re.sub('[^\s\w\-\\.]', '_', str($i.element_identifier))
ln -s '$file_name' 'inputs/${identifier}.fasta' &&
#end for
Fasta_to_Contig2Bin.sh
--extension fasta
--input_folder 'inputs'
> '$contigs2bin'
| Functional tests |
| name | inputs | outputs | required files |
| Test-1 |
inputs: list collection |
name: value |
maxbin2.001.fasta maxbin2.002.fasta value |