Repository revision
10:1aca7da945ba

Repository 'openms_ticcalculator'
hg clone https://toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ticcalculator

TICCalculator tool metadata
Miscellaneous
Calculates the TIC from a mass spectrometric raw file (useful for benchmarking).
TICCalculator
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ticcalculator/TICCalculator/2.5+galaxy0
2.5+galaxy0
None
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ticcalculator/TICCalculator/2.6+galaxy0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ticcalculator/TICCalculator/2.5+galaxy0 (this tool)
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ticcalculator/TICCalculator/2.3.0
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ticcalculator/TICCalculator/2.2.0.1
toolshed.g2.bx.psu.edu/repos/galaxyp/openms_ticcalculator/TICCalculator/2.1.0
TICCalculator
Requirements (dependencies defined in the <requirements> tag set)
name version type
openms 2.5 package
openms-thirdparty 2.5 package
blast 2.9.0 package
openjdk 8.0.192 package
ctdopts 1.4 package
Functional tests
name inputs outputs required files
Test-1 in: MapNormalizer_output.mzML
read_method: regular
loadData: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
MapNormalizer_output.mzML
value
Test-2 in: MapNormalizer_output.mzML
read_method: streaming
loadData: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
MapNormalizer_output.mzML
value
Test-3 in: MapNormalizer_output.mzML
read_method: streaming
loadData: False
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
MapNormalizer_output.mzML
value
Test-4 in: MapNormalizer_output.mzML
read_method: indexed
loadData: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
MapNormalizer_output.mzML
value
Test-5 in: MapNormalizer_output.mzML
read_method: indexed_parallel
loadData: True
adv_opts_cond|force: False
adv_opts_cond|test: true
adv_opts_cond|adv_opts_selector: advanced
OPTIONAL_OUTPUTS: ctd_out_FLAG
name: value
MapNormalizer_output.mzML
value