Repository revision
11:1adcc5678f70

Repository 'lumpyexpress'
hg clone https://toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress

lumpyexpress tool metadata
Miscellaneous
lumpyexpress
Single or paired end SV detection
lumpyexpress_0_1
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.9
0.1.9
lumpy 2>&1 >/dev/null | grep Program | cut -d ' ' -f 4 | cut -d ')' -f 1
True
Version lineage of this tool (guids ordered most recent to oldest)
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.9 (this tool)
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.8
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.7
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.6
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.5
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.4
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.3
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.2
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.0
lumpyexpress_0_1
Requirements (dependencies defined in the <requirements> tag set)
name version type
python 2.7 package
pysam 0.8.3 package
numpy 1.13.1 package
lumpy-sv 0.2.13 package
samtools 1.9 package
samblaster 0.1.24 package
sambamba 0.6.5 package
gawk 4.2.1 package
Functional tests
name inputs outputs required files
Test-1 paired: True
bams: ['test1-1.bam', 'test1-2.bam', 'test1-3.bam']
attributes: name
test1-1.bam
test1-2.bam
test1-3.bam
name