Miscellaneous |
Version lineage of this tool (guids ordered most recent to oldest) |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.9 (this tool) |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.8 |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.7 |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.6 |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.5 |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.4 |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.3 |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.2 |
toolshed.g2.bx.psu.edu/repos/hepcat72/lumpyexpress/lumpyexpress_0_1/0.1.0 |
lumpyexpress_0_1 |
Requirements (dependencies defined in the <requirements> tag set) |
name | version | type |
python | 2.7 | package |
pysam | 0.8.3 | package |
numpy | 1.13.1 | package |
lumpy-sv | 0.2.13 | package |
samtools | 1.9 | package |
samblaster | 0.1.24 | package |
sambamba | 0.6.5 | package |
gawk | 4.2.1 | package |
Functional tests |
name | inputs | outputs | required files |
Test-1 |
paired: True bams: ['test1-1.bam', 'test1-2.bam', 'test1-3.bam'] |
attributes: name |
test1-1.bam test1-2.bam test1-3.bam name |