Split by group tool metadata

Miscellaneous

Name: Split by group

Description:

Id: tp_split_on_column

Guid: toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.6

Version: 0.6

Version command string: None

Display in tool panel: True

Version lineage of this tool (guids ordered most recent to oldest)

toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.6 (this tool)

toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.5

toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.4

toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.2

toolshed.g2.bx.psu.edu/repos/bgruening/split_file_on_column/tp_split_on_column/0.1.1

tp_split_on_column

Requirements (dependencies defined in the <requirements> tag set)

Requirements:

name

version

type

gawk

5.1.0

package

Additional information about this tool

Command:

mkdir tmp_out &&
    #if $include_header
        awk -F '\t' 'NR==1{hdr=$0;next}f!="tmp_out/"\$$column".$infile.ext"{if(f) close(f); f="tmp_out/"\$$column".$infile.ext"}; {if (!seen[f]++) print hdr>f; print >> f}' $infile
    #else
        awk -F'\t' '{print >> "tmp_out/"\$$column".$infile.ext" }' '$infile'
    #end if

Interpreter: None

Forces a history refresh: False

Functional tests

name

inputs

outputs

required files

Test-1

infile: 5cols.tabular
column: 5
include_header: False

5cols.tabular

Test-2

infile: 5cols-with-header.tabular
column: 5
include_header: True

5cols-with-header.tabular

Test-3

infile: 5cols-with-header.tabular
column: 5
include_header: False

5cols-with-header.tabular

Test-4

infile: 5cols-unsorted.tabular
column: 5
include_header: False

5cols-unsorted.tabular

Test-5

infile: 5cols-unsorted-with-header.tabular
column: 5
include_header: True

5cols-unsorted-with-header.tabular